I.R.Yukhnovskii, Ja.M.Ilnytskyi, M.P.Kozlovskii. Application of the specific phase space division to investigation of the 3D Ising model (Proc. of the conference Modern problems of statistical physics, Kyiv, Naukova dumka, vol.2, pp.103-108, 1989, in Russian).
I.R.Yukhnovskii, M.P.Kozlovskii, Ja.M.Ilnytskyi. On choosing of the renormalization group parameter in investigation of 3D Ising model, Ukrainian physical journal, vol.34, No.7, pp.1106-1110, 1989 (in Russian).
Ja.M.Ilnytskyi, M.P.Kozlovskii, Theory of phase transitions by the collective variables method: accurate critical indices and detailed comparison with the other approaches. Condensed Matter Physics, Iss. 5, pp.23-41, 1995.
Ja.M.Ilnytskyi, M.P.Kozlovskii, I.R.Yukhnovskii. On the theory of phase transitions by collective variables method, International Journal of Modern Physics B, vol.11, No.8, pp.1009-1022, 1997.
Ja.M.Ilnytskyi. A study of the nematic-isotropic phase transition in liquid crystals by Monte Carlo simulations of lattice models, Journal of Physical Studies, vol.1, No.2, pp.232-240, 1997.
Ja.Ilnytskyi, Modified Lebwohl-Lasher model for investigation of nematic-isotropic phase transition in liquid crystals, Mol. Cryst. Liq. Cryst., vol.323, pp.113-128, 1998.
Ja.M.Ilnytskyi, Nematic-isotropic transition in a weakly diluted lattice model: monte carlo study, Condensed Matter Physics, 1999, vol. 2, No. 2(18), p. 189-196.
Ja.Ilnytskyi, S.Sokolowski, O.Pizio, Nematic-isotropic transition in a lattice model with quenched disordered impurities. A Monte Carlo study, Phys. Rev. E, vol.59, No.4, pp.4161-4168, 1999, abstract, ps.
Ilnytskyi J, Wilson MR, A domain decomposition molecular dynamics program for the simulation of flexible molecules with an arbitrary topology of Lennard-Jones and/or Gay-Berne sites, Computer physics communications 134 (1): 23-32 FEB 1 2001
Ilnytskyi JM, Wilson MR, Molecular models in computer simulation of liquid crystals journal of molecular liquids 92 (1-2): 21-28 Sp. Iss. SI JUN 2001
Earl DJ, Ilnytskyi J, Wilson MR, Computer simulations of soft repulsive spherocylinders Molecular physics 99 (20): 1719-1726 OCT 2001
Ilnytskyi JM, Wilson MR, A domain decomposition molecular dynamics program for the simulation of flexible molecules of spherically-symmetrical and nonspherical sites. II. Extension to NVT and NPT ensembles, Computer physics communications 148 (1): 43-58 OCT 1 2002
Cuetos A, Ilnytskyi JM, Wilson MR, Rotational viscosities of Gay-Berne mesogens Molecular physics 100 (24): 3839-3845 DEC 20 2002
Saphiannikova M, Radtchenko I, Sukhorukov G, et al., Molecular-dynamics simulations and x-ray analysis of dye precipitates in the polyelectrolyte microcapsules, Journal of chemical physics 118 (19): 9007-9014 MAY 15 2003
Wilson MR, Ilnytskyi JM, Stimson LM, Computer simulations of a liquid crystalline dendrimer in liquid crystalline solvents, Journal of chemical physics 119 (6): 3509-3515 AUG 8 2003
Wilson M. R., Ilnytskyi J. M., Parallel computer simulation techniques for the study of macromolecules, in Computer Simulations of liquid crystals and polymers, eds Pasini P., Zannoni C. and Zu(mer S., (Kluwer 2004), 335-356.
Wilson M. R., Ilnytskyi J. M., Stimson L. M., Hughes Z. E., Computer simulations of liquid crystal polymers and dendrimers in Computer Simulations of liquid crystals and polymers, eds Pasini P., Zannoni C. and Zu(mer S., (Kluwer 2004), 57-78.
D. Ivaneyko, J. Ilnytskyi, B. Berche, Yu. Holovatch, Criticality of the random-site Ising model: Metropolis, Swendsen-Wang and Wolff Monte Carlo algorithms, Condensed matter physics 8 (1): 149-162 2005
Ilnytskyi J, Saphiannikova M, Neher D, Photo-induced deformations in azobenzene-containing side-chain polymers: molecular dynamics study, Condensed matter physics 9 (1): 87-94 (2006)
D. Ivaneyko, J. Ilnytskyi, B. Berche, Yu. Holovatch, Static and dynamic critical behaviour of 3d random-site Ising model: Different Monte Carlo algorithms, Journal of molecular liquids 127 (1-3): 69-70 Sp. Iss. SI AUG 15 (2006)
D. Ivaneyko, J. Ilnytskyi, B. Berche, Yu. Holovatch, Local and cluster critical dynamics of the 3d random-site Ising model, Physica A-Statistical mechanics and its applications 370 (2): 163-178 OCT 15 (2006)
M.R.Wilson, L.M.Stimson, J.M.Ilnytskyi, The influence of lateral and terminal substitution on the structure of a liquid crystal dendrimer in nematic solution: A computer simulation study, Liquid Crystals, 33, No.10, 1167-1175, (2006)
J.M.Ilnytskyi, D.Neher, The structure and internal dynamics of a side-chain liquid crystalline polymer in various phases by molecular dynamics simulations: a step towards coarse-graining, J.Chem.Phys., 126, 174905 (2007)
D. Ivaneyko, B. Berche, Yu. Holovatch, Ja. Ilnytskyi. "Impurity-impurity pair correlation function and paramagnetic-ferromagnetic phase transition in the random Ising model. " Problems in Atomic Science and Technology, Ser. Nuclear Physics, No 3, 372–375 (2007).
J.M. Ilnytskyi, Yu. Holovatch. "How does the scaling for the polymer chain in the dissipative particle dynamics hold?" Condens. Matter Phys., Vol.10, 539-552 (2007).
Hughes, Z. E., Stimson, L. M., Slim, H., Lintuvuori, J.S., Ilnytskyi, J. M. and Wilson M. R. An investigation of soft-core potentials for the simulation of mesogenic molecules and molecules composed of rigid and flexible segments., Computer Physics Communications, Vol. 178, Issue 10, pp. 724-731 (2008).
Ivaneyko, B. Berche, Yu. Holovatch, J. Ilnytskyi. "On the universality class of the 3d Ising model with long-range-correlated disorder " Physica A 387, 4497-4512 (2008).
J.M. Ilnytskyi, D.Neher, M.Saphiannikova, M.R.Wilson, L.M. Stimson, "Molecular Dynamics Simulations of Various Branched Polymeric Liquid Crystals", Molecular Crystals and Liquid Crystals, Vol. 496, pp. 186-201 (2008).
B. Stiller, M. Saphiannikova, K. Morawetz, J. Ilnytskyi, D. Neher, I. Muzikante, P. Pastors, V. Kampars, "Polymers films with indandione derivatives as alternatives to azobenzene polymers for optical patterning", Thin Solid Films, Vol. 516, Issue 24, pp. 8893-8898 (2008).
J.M. Ilnytskyi, T. Patsahan, M. Holovko, P.E. Krouskop, M.P. Makowski, "Morphological Changes in Block Copolymer Melts Due to a Variation of Intramolecular Branching. Dissipative Particles Dynamics Study", Macromolecules, Vol. 41, Issue 24, pp. 9904–9913 (2008).
J.M. Ilnytskyi, D.Neher, M.Saphiannikova, “Molecular dynamics simulations of photo-induced deformations in azobenzene-containing polymers”, in CP1091, Modeling and Simulation of New Materials: Tenth Granada Lectures, ed. P.L.Garrido, P.I.Hurtago, J.Marro, AIP, 2009, p.253-255.